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Slot: histological_composition_measures

A set of one or more observations that quantify the relative or absolute composition of a specimen at cellular level - e.g. how many cells in the specimen are of a given type, or exhibit a particular cellular phenotype.

URI: crdch:specimen__histological_composition_measures

Domain and Range

Specimen0..* HistologicalCompositionObservationSet

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Children

Used by

Other properties

Comments: Observations are flexible containers for capturing a specific type of observation/measurement data about an object, along with metadata about how it was generated. The specific type of observation made is captured as data in the Observation object.
Examples:
Indirect Mappings: GDC:Slide.number_proliferating_cells
GDC:Slide.percent_eosinophil_infiltration
GDC:Slide.percent_granulocyte_infiltration
GDC:Slide.percent_inflam_infiltration
GDC:Slide.percent_lymphocyte_infiltration
GDC:Slide.percent_monocyte_infiltration
GDC:Slide.percent_necrosis
GDC:Slide.percent_neutrophil_infiltration
GDC:Slide.percent_normal_cells
GDC:Slide.percent_stromal_cells
GDC:Slide.percent_tumor_cells
GDC:Slide.percent_tumor_nuclei
GDC:Slide.percent_rhabdoid_features
GDC:Slide.percent_sarcomatoid_features
HTAN:Biospecimen.NumberProliferatingCells
HTAN:Biospecimen.PercentEosinophilInfiltration
HTAN:Biospecimen.PercentGranulocyteInfiltration
HTAN:Biospecimen.PercentInflamInfiltration
HTAN:Biospecimen.PercentLymphocyteInfiltration
HTAN:Biospecimen.PercentMonocyteInfiltration
HTAN:Biospecimen.PercentNecrosis
HTAN:Biospecimen.PercentNeutrophilInfiltration
HTAN:Biospecimen.PercentNormalCells
HTAN:Biospecimen.PercentStromalCells
HTAN:Biospecimen.PercentTumorCells
HTAN:Biospecimen.PercentTumorNuclei
HTAN:Biospecimen.TumorInfiltratingLymphocytes
ICDC:Sample.non_tumor_tissue_area
ICDC:Sample.tumor_tissue_area
ICDC:Sample.percentage_tumor
ICDC:Sample.percentage_stroma
ICDC:Sample.analysis_area
ICDC:Sample.analysis_area_percentage_stroma
ICDC:Sample.analysis_area_percentage_tumor
ICDC:Sample.analysis_area_percentage_glass
ICDC:Sample.analysis_area_percentage_pigmented_tumor